@Dan_Woolf Hmm so I tried re-indexing the feed and the debug showed that there were no orphaned packages. When I try to build my package with gradle it still says it could not find the .jar files. When I check proget to see if it caches it I see that it manages to fetch the .pom but not the .jar.
The strange thing is when I use the curl command for example,
curl http://my.server.local:8624/maven2/my-new-feed/org/hamcrest/hamcrest-core/1.3/hamcrest-core-1.3.jar --output hamcrest-core-1.3.jar to check if it's available I get a 404 not found error. But when I delete the .pom making remote icon show up again, running that same command makes the .jar available?